Jonatha Krebs, M.Sc.

2019

Exploration of Artificial Intelligence Use with ARIES in Multiple Myeloma Research. Loda; Krebs; Danhof; Schreder; Solimando; Strifler; Rasche; Kortüm; Kerscher; Knop; et al. in Journal of Clinical Medicine (2019). 8(7) 999.
[ BibTeX ] [ URL ]
 
@article{Loda_2019, author = {Loda and Krebs and Danhof and Schreder and Solimando and Strifler and Rasche and Kortüm and Kerscher and Knop and et al.}, journal = {Journal of Clinical Medicine}, keywords = {myown}, month = {jul}, number = 7, pages = 999, publisher = {MDPI AG}, title = {Exploration of Artificial Intelligence Use with ARIES in Multiple Myeloma Research}, volume = 8, year = 2019 }

Identifying Heart Failure Patients by Medical Text Classification. Krebs, Jonathan; Krug, Markus; Fette, Georg; Dietrich, Georg; Ertl, Maximilian; Güder, Gülmisal; Puppe, Frank; Kaspar, Mathias in Studies in Health Technology and Informatics, A. S. Shvo, I. Madsen, H.-U. Prokosch, K. Häyrinen, K.-H. Wolf, F. Martín-Sánchez, M. Löbe, T. M. Deserno (Hrsg.) (2019). (Bd. 258) 251–252.
[ BibTeX ] [ URL ]
 
@inproceedings{conf/efmi-stc/KrebsKFDEGPK19, author = {Krebs, Jonathan and Krug, Markus and Fette, Georg and Dietrich, Georg and Ertl, Maximilian and Güder, Gülmisal and Puppe, Frank and Kaspar, Mathias}, booktitle = {EFMI-STC}, crossref = {conf/efmi-stc/2019}, editor = {Shvo, Amnon Shabo and Madsen, Inge and Prokosch, Hans-Ulrich and Häyrinen, Kristiina and Wolf, Klaus-Hendrik and Martín-Sánchez, Fernando and Löbe, Matthias and Deserno, Thomas M.}, keywords = {myown}, pages = {251-252}, publisher = {IOS Press}, series = {Studies in Health Technology and Informatics}, title = {Identifying Heart Failure Patients by Medical Text Classification.}, volume = 258, year = 2019 }

Detection of Scenes in Fiction. Gius, Evelyn; Jannidis, Fotis; Krug, Markus; Zehe, Albin; Hotho, Andreas; Puppe, Frank; Krebs, Jonathan; Reiter, Nils; Wiedmer, Nathalie; Konle, Leonard (2019).
[ BibTeX ]
 
@inproceedings{gius2019detection, author = {Gius, Evelyn and Jannidis, Fotis and Krug, Markus and Zehe, Albin and Hotho, Andreas and Puppe, Frank and Krebs, Jonathan and Reiter, Nils and Wiedmer, Nathalie and Konle, Leonard}, booktitle = {Proceedings of Digital Humanities 2019}, keywords = {myown}, title = {Detection of Scenes in Fiction}, year = 2019 }

Implementation of a HL7 CQL engine using the graph database Neo4J. Fette, Georg; Kaspar, Mathias; Liman, Leon; Eertl, Maximilian; Krebs, Jonathan; Störk, Stefan; Puppe, Frank (2019).
[ BibTeX ]
 
@article{fette2019implementation, author = {Fette, Georg and Kaspar, Mathias and Liman, Leon and Eertl, Maximilian and Krebs, Jonathan and Störk, Stefan and Puppe, Frank}, keywords = {myown}, title = {Implementation of a HL7 CQL engine using the graph database Neo4J}, year = 2019 }

Query Translation between AQL and CQL. Fette, Georg; Kaspar, Mathias; Leon, Liman; Ertl, Maximilian; Krebs, Jonathan; Dietrich, Georg; Störk, Stefan; Puppe, Frank (2019).
[ BibTeX ]
 
@article{fettequery, author = {Fette, Georg and Kaspar, Mathias and Leon, Liman and Ertl, Maximilian and Krebs, Jonathan and Dietrich, Georg and Störk, Stefan and Puppe, Frank}, keywords = {myown}, title = {Query Translation between AQL and CQL}, year = 2019 }

Replicating medication trend studies using ad hoc information extraction in a clinical data warehouse. Dietrich, Georg; Krebs, Jonathan; Liman, Leon; Fette, Georg; Ertl, Maximilian; Kaspar, Mathias; Störk, Stefan; Puppe, Frank in BMC Med. Inf. & Decision Making (2019). 19(1) 15:1–15:21.
[ BibTeX ] [ URL ]
 
@article{journals/midm/DietrichKLFEKSP19, author = {Dietrich, Georg and Krebs, Jonathan and Liman, Leon and Fette, Georg and Ertl, Maximilian and Kaspar, Mathias and Störk, Stefan and Puppe, Frank}, journal = {BMC Med. Inf. & Decision Making}, keywords = {myown}, number = 1, pages = {15:1-15:21}, title = {Replicating medication trend studies using ad hoc information extraction in a clinical data warehouse.}, volume = 19, year = 2019 }

2018

Finding Needles in the Haystack: Identifying Patients with Rare Subtype of Multiple Myeloma Supported by a Data Warehouse and Information Extraction. Krebs, Jonathan; Bittrich, Max; Dietrich, Georg; Ertl, Maximilian; Fette, Georg; Kaspar, Mathias; Liman, Leon; Einsele, Hermann; Puppe, Frank; Knop, Stefan in Studies in Health Technology and Informatics, U. Hübner, U. Sax, H.-U. Prokosch, B. Breil, H. Binder, A. Zapf, B. Strahwald, T. Beißbarth, N. Grabe, A. Schöler (Hrsg.) (2018). (Bd. 253) 160–164.
[ BibTeX ] [ URL ]
 
@inproceedings{conf/gmds/KrebsBDEFKLEPK18, author = {Krebs, Jonathan and Bittrich, Max and Dietrich, Georg and Ertl, Maximilian and Fette, Georg and Kaspar, Mathias and Liman, Leon and Einsele, Hermann and Puppe, Frank and Knop, Stefan}, booktitle = {GMDS}, crossref = {conf/gmds/2018}, editor = {Hübner, Ursula and Sax, Ulrich and Prokosch, Hans-Ulrich and Breil, Bernhard and Binder, Harald and Zapf, Antonia and Strahwald, Brigitte and Beißbarth, Tim and Grabe, Niels and Schöler, Anke}, keywords = {myown}, pages = {160-164}, publisher = {IOS Press}, series = {Studies in Health Technology and Informatics}, title = {Finding Needles in the Haystack: Identifying Patients with Rare Subtype of Multiple Myeloma Supported by a Data Warehouse and Information Extraction.}, volume = 253, year = 2018 }

Estimating a Bias in ICD Encodings for Billing Purposes. Fette, Georg; Krug, Markus; Kaspar, Mathias; Liman, Leon; Dietrich, Georg; Ertl, Maximilian; Krebs, Jonathan; Störk, Stefan; Puppe, Frank in Studies in Health Technology and Informatics, A. Ugon, D. Karlsson, G. O. Klein, A. Moen (Hrsg.) (2018). (Bd. 247) 141–145.
[ BibTeX ] [ URL ]
 
@inproceedings{conf/mie/FetteKKLDEKSP18, author = {Fette, Georg and Krug, Markus and Kaspar, Mathias and Liman, Leon and Dietrich, Georg and Ertl, Maximilian and Krebs, Jonathan and Störk, Stefan and Puppe, Frank}, booktitle = {MIE}, crossref = {conf/mie/2018}, editor = {Ugon, Adrien and Karlsson, Daniel and Klein, Gunnar O. and Moen, Anne}, keywords = {myown}, pages = {141-145}, publisher = {IOS Press}, series = {Studies in Health Technology and Informatics}, title = {Estimating a Bias in ICD Encodings for Billing Purposes.}, volume = 247, year = 2018 }

Exporting Data from a Clinical Data Warehouse. Fette, Georg; Kaspar, Mathias; Liman, Leon; Dietrich, Georg; Ertl, Maximilian; Krebs, Jonathan; Störk, Stefan; Puppe, Frank in Studies in Health Technology and Informatics, G. Schreier, D. Hayn (Hrsg.) (2018). (Bd. 248) 88–93.
[ BibTeX ] [ URL ]
 
@inproceedings{conf/ehealth2/FetteKLDEKSP18, author = {Fette, Georg and Kaspar, Mathias and Liman, Leon and Dietrich, Georg and Ertl, Maximilian and Krebs, Jonathan and Störk, Stefan and Puppe, Frank}, booktitle = {eHealth}, crossref = {conf/ehealth2/2018}, editor = {Schreier, Günter and Hayn, Dieter}, keywords = {myown}, pages = {88-93}, publisher = {IOS Press}, series = {Studies in Health Technology and Informatics}, title = {Exporting Data from a Clinical Data Warehouse.}, volume = 248, year = 2018 }

Ad Hoc Information Extraction for Clinical Data Warehouses. Dietrich, Georg; Krebs, Jonathan; Fette, Georg; Ertl, Maximilian; Kaspar, Mathias; Störk, Stefan; Puppe, Frank in Methods of Information in Medicine (2018).
[ BibTeX ]
 
@article{dietrich2018information, author = {Dietrich, Georg and Krebs, Jonathan and Fette, Georg and Ertl, Maximilian and Kaspar, Mathias and Störk, Stefan and Puppe, Frank}, journal = {Methods of Information in Medicine}, keywords = {myown}, title = {Ad Hoc Information Extraction for Clinical Data Warehouses}, year = 2018 }

2017

Semi-Automatic Terminology Generation for Information Extraction from German Chest X-Ray Reports. Krebs, Jonathan; Corovic, Hamo; Dietrich, Georg; Ertl, Max; Fette, Georg; Kaspar, Mathias; Krug, Markus; Störk, Stefan; Puppe, Frank in Studies in Health Technology and Informatics, R. Röhrig, A. Timmer, H. Binder, U. Sax (Hrsg.) (2017). (Bd. 243) 80–84.
[ BibTeX ] [ URL ]
 
@inproceedings{conf/gmds/KrebsCDEFKKSP17, author = {Krebs, Jonathan and Corovic, Hamo and Dietrich, Georg and Ertl, Max and Fette, Georg and Kaspar, Mathias and Krug, Markus and Störk, Stefan and Puppe, Frank}, booktitle = {GMDS}, crossref = {conf/gmds/2017}, editor = {Röhrig, Rainer and Timmer, Antje and Binder, Harald and Sax, Ulrich}, keywords = {myown}, pages = {80-84}, publisher = {IOS Press}, series = {Studies in Health Technology and Informatics}, title = {Semi-Automatic Terminology Generation for Information Extraction from German Chest X-Ray Reports.}, volume = 243, year = 2017 }

A Customizable Importer for the Clinical Data Warehouses PaDaWaN and I2B2. Fette, Georg; Kaspar, Mathias; Dietrich, Georg; Ertl, Maximilian; Krebs, Jonathan; Störk, Stefan; Puppe, Frank in Studies in Health Technology and Informatics, R. Röhrig, A. Timmer, H. Binder, U. Sax (Hrsg.) (2017). (Bd. 243) 90–94.
[ BibTeX ] [ URL ]
 
@inproceedings{conf/gmds/FetteKDEKSP17, author = {Fette, Georg and Kaspar, Mathias and Dietrich, Georg and Ertl, Maximilian and Krebs, Jonathan and Störk, Stefan and Puppe, Frank}, booktitle = {GMDS}, crossref = {conf/gmds/2017}, editor = {Röhrig, Rainer and Timmer, Antje and Binder, Harald and Sax, Ulrich}, keywords = {myown}, pages = {90-94}, publisher = {IOS Press}, series = {Studies in Health Technology and Informatics}, title = {A Customizable Importer for the Clinical Data Warehouses PaDaWaN and I2B2.}, volume = 243, year = 2017 }

Extending the Query Language of a Data Warehouse for Patient Recruitment. Dietrich, Georg; Ertl, Maximilian; Fette, Georg; Kaspar, Mathias; Krebs, Jonathan; Mackenrodt, Daniel; Störk, Stefan; Puppe, Frank in Studies in Health Technology and Informatics, R. Röhrig, A. Timmer, H. Binder, U. Sax (Hrsg.) (2017). (Bd. 243) 152–156.
[ BibTeX ] [ URL ]
 
@inproceedings{conf/gmds/DietrichEFKKMSP17, author = {Dietrich, Georg and Ertl, Maximilian and Fette, Georg and Kaspar, Mathias and Krebs, Jonathan and Mackenrodt, Daniel and Störk, Stefan and Puppe, Frank}, booktitle = {GMDS}, crossref = {conf/gmds/2017}, editor = {Röhrig, Rainer and Timmer, Antje and Binder, Harald and Sax, Ulrich}, keywords = {myown}, pages = {152-156}, publisher = {IOS Press}, series = {Studies in Health Technology and Informatics}, title = {Extending the Query Language of a Data Warehouse for Patient Recruitment.}, volume = 243, year = 2017 }

2016

Anonymisierung, Segmentierung und Terminologie-Entwicklung zur Informationsextraktion aus unstrukturierten, telegrammartigen, medizinischen Dokumenten Krebs, Jonathan (2016).
[ BibTeX ]
 
@mastersthesis{krebs2016anonymisierung, author = {Krebs, Jonathan}, keywords = {myown}, title = {Anonymisierung, Segmentierung und Terminologie-Entwicklung zur Informationsextraktion aus unstrukturierten, telegrammartigen, medizinischen Dokumenten}, year = 2016 }

An improved data workflow for a medical data warehouse. Fette, Georg; Ertl, Maximilian; Dietrich, Georg; Krebs, Jonathan; Toepfer, Martin; Störk, Stefan; Kaspar, Mathias; Puppe, Frank in European Journal of Epidemiology; Health—exploring complexity: an interdisciplinary systems approach HEC2016 (2016). 31, Supplement 1 54.
[ Abstract ] [ BibTeX ]
 
In recent years clinical data warehouses (CDW) have become more and more popular to support scientific work in the medical domain. Despite the tool support for many subtasks it is still a laborious task to establish a CDW in an existing clinical data environment. We present a workflow which can be taken as a blueprint for newly established CDW projects and the implementation of this blueprint at the University Clinic Würzburg.
@article{noauthororeditor, abstract = {In recent years clinical data warehouses (CDW) have become more and more popular to support scientific work in the medical domain. Despite the tool support for many subtasks it is still a laborious task to establish a CDW in an existing clinical data environment. We present a workflow which can be taken as a blueprint for newly established CDW projects and the implementation of this blueprint at the University Clinic Würzburg.}, author = {Fette, Georg and Ertl, Maximilian and Dietrich, Georg and Krebs, Jonathan and Toepfer, Martin and Störk, Stefan and Kaspar, Mathias and Puppe, Frank}, journal = {European Journal of Epidemiology; Health—exploring complexity: an interdisciplinary systems approach HEC2016}, keywords = {myown}, month = {August}, pages = 54, title = {An improved data workflow for a medical data warehouse}, volume = {31, Supplement 1}, year = 2016 }

Web-PaDaWaN: Eine Web-basierte Benutzeroberfläche für ein klinisches Data Warehouse. Dietrich, Georg; Fell, Friedreich; Fette, Georg; Krebs, Jonathan; Ertl, Maximilian; Kaspar, Mathias; Störk, Stefan (2016).
[ BibTeX ] [ URL ]
 
@article{dietrich2016webpadawan, author = {Dietrich, Georg and Fell, Friedreich and Fette, Georg and Krebs, Jonathan and Ertl, Maximilian and Kaspar, Mathias and Störk, Stefan}, keywords = {myown}, month = {August}, title = {Web-PaDaWaN: Eine Web-basierte Benutzeroberfläche für ein klinisches Data Warehouse}, year = 2016 }

2013

Implementierung einer HTML5-Applikation mit Offline-Fähigkeit zur Erstellung von Graphen für den Einsatz im CaseTrain-Projekt Krebs, Jonathan (2013).
[ BibTeX ]
 
@mastersthesis{krebs2013implementierung, author = {Krebs, Jonathan}, keywords = {myown}, title = {Implementierung einer HTML5-Applikation mit Offline-Fähigkeit zur Erstellung von Graphen für den Einsatz im CaseTrain-Projekt}, year = 2013 }