Jonatha Krebs, M.Sc.

University of Würzburg
Chair of Artificial Intelligence
and Knowledge Systems
Am Hubland
D-97074 Würzburg
Room: B007
Phone: +49 931 / 31 - 89648
Fax: +49 931 / 31 - 86732
jonathan.krebs@uni-wuerzburg.de
About Me
I am working at the Department for Artificial Intelligence and Applied Computer Science since the beginning of 2015. While working at the PaDaWaN/misbased project, I finished my master's degree in computer science in autumn 2016.
Research Interests
My research interests include:
- machine learning
- textmining
- natural language processing
- ontology learning
- knowledge-based systems
- software development
... especially in the domain of medical text documents, but also in every other possible domain.
Private Interests
In my spare time I am playing keyboards and drums in several bands and orchestras and I am very interested in music from all epochs and styles in general. Further interests include books, films and tv shows, fotography, dancing, pc and board games, ...
Teaching
WS 18/19 | Natural Language Processing and Textmining (Coordinator for exercises) |
SS 18 | Medical Informatics(Coordinator for exercises) |
WS 17/18 | Natural Language Processing and Textmining (Coordinator for exercises) |
SS 17 | Software engineering (Coordinator for exercises) |
regularly | Supervision of seminar papers, groups in the software practical course and final theses. |
Publications
2019
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Exploration of Artificial Intelligence Use with ARIES in Multiple Myeloma Research. Loda; Krebs; Danhof; Schreder; Solimando; Strifler; Rasche; Kortüm; Kerscher; Knop; et al. in Journal of Clinical Medicine (2019). 8(7) 999.
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Identifying Heart Failure Patients by Medical Text Classification. Krebs, Jonathan; Krug, Markus; Fette, Georg; Dietrich, Georg; Ertl, Maximilian; Güder, Gülmisal; Puppe, Frank; Kaspar, Mathias in Studies in Health Technology and Informatics, A. S. Shvo, I. Madsen, H.-U. Prokosch, K. Häyrinen, K.-H. Wolf, F. Martín-Sánchez, M. Löbe, T. M. Deserno (Hrsg.) (2019). (Bd. 258) 251–252.
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Detection of Scenes in Fiction. Gius, Evelyn; Jannidis, Fotis; Krug, Markus; Zehe, Albin; Hotho, Andreas; Puppe, Frank; Krebs, Jonathan; Reiter, Nils; Wiedmer, Nathalie; Konle, Leonard (2019).[ BibTeX ]
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Implementation of a HL7 CQL engine using the graph database Neo4J. Fette, Georg; Kaspar, Mathias; Liman, Leon; Eertl, Maximilian; Krebs, Jonathan; Störk, Stefan; Puppe, Frank (2019).[ BibTeX ]
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Query Translation between AQL and CQL. Fette, Georg; Kaspar, Mathias; Leon, Liman; Ertl, Maximilian; Krebs, Jonathan; Dietrich, Georg; Störk, Stefan; Puppe, Frank (2019).[ BibTeX ]
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Replicating medication trend studies using ad hoc information extraction in a clinical data warehouse. Dietrich, Georg; Krebs, Jonathan; Liman, Leon; Fette, Georg; Ertl, Maximilian; Kaspar, Mathias; Störk, Stefan; Puppe, Frank in BMC Med. Inf. & Decision Making (2019). 19(1) 15:1–15:21.
2018
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Finding Needles in the Haystack: Identifying Patients with Rare Subtype of Multiple Myeloma Supported by a Data Warehouse and Information Extraction. Krebs, Jonathan; Bittrich, Max; Dietrich, Georg; Ertl, Maximilian; Fette, Georg; Kaspar, Mathias; Liman, Leon; Einsele, Hermann; Puppe, Frank; Knop, Stefan in Studies in Health Technology and Informatics, U. Hübner, U. Sax, H.-U. Prokosch, B. Breil, H. Binder, A. Zapf, B. Strahwald, T. Beißbarth, N. Grabe, A. Schöler (Hrsg.) (2018). (Bd. 253) 160–164.
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Estimating a Bias in ICD Encodings for Billing Purposes. Fette, Georg; Krug, Markus; Kaspar, Mathias; Liman, Leon; Dietrich, Georg; Ertl, Maximilian; Krebs, Jonathan; Störk, Stefan; Puppe, Frank in Studies in Health Technology and Informatics, A. Ugon, D. Karlsson, G. O. Klein, A. Moen (Hrsg.) (2018). (Bd. 247) 141–145.
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Exporting Data from a Clinical Data Warehouse. Fette, Georg; Kaspar, Mathias; Liman, Leon; Dietrich, Georg; Ertl, Maximilian; Krebs, Jonathan; Störk, Stefan; Puppe, Frank in Studies in Health Technology and Informatics, G. Schreier, D. Hayn (Hrsg.) (2018). (Bd. 248) 88–93.
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Ad Hoc Information Extraction for Clinical Data Warehouses. Dietrich, Georg; Krebs, Jonathan; Fette, Georg; Ertl, Maximilian; Kaspar, Mathias; Störk, Stefan; Puppe, Frank in Methods of Information in Medicine (2018).[ BibTeX ]
2017
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Semi-Automatic Terminology Generation for Information Extraction from German Chest X-Ray Reports. Krebs, Jonathan; Corovic, Hamo; Dietrich, Georg; Ertl, Max; Fette, Georg; Kaspar, Mathias; Krug, Markus; Störk, Stefan; Puppe, Frank in Studies in Health Technology and Informatics, R. Röhrig, A. Timmer, H. Binder, U. Sax (Hrsg.) (2017). (Bd. 243) 80–84.
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A Customizable Importer for the Clinical Data Warehouses PaDaWaN and I2B2. Fette, Georg; Kaspar, Mathias; Dietrich, Georg; Ertl, Maximilian; Krebs, Jonathan; Störk, Stefan; Puppe, Frank in Studies in Health Technology and Informatics, R. Röhrig, A. Timmer, H. Binder, U. Sax (Hrsg.) (2017). (Bd. 243) 90–94.
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Extending the Query Language of a Data Warehouse for Patient Recruitment. Dietrich, Georg; Ertl, Maximilian; Fette, Georg; Kaspar, Mathias; Krebs, Jonathan; Mackenrodt, Daniel; Störk, Stefan; Puppe, Frank in Studies in Health Technology and Informatics, R. Röhrig, A. Timmer, H. Binder, U. Sax (Hrsg.) (2017). (Bd. 243) 152–156.
2016
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Anonymisierung, Segmentierung und Terminologie-Entwicklung zur Informationsextraktion aus unstrukturierten, telegrammartigen, medizinischen Dokumenten Krebs, Jonathan (2016).[ BibTeX ]
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An improved data workflow for a medical data warehouse. Fette, Georg; Ertl, Maximilian; Dietrich, Georg; Krebs, Jonathan; Toepfer, Martin; Störk, Stefan; Kaspar, Mathias; Puppe, Frank in European Journal of Epidemiology; Health—exploring complexity: an interdisciplinary systems approach HEC2016 (2016). 31, Supplement 1 54.
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Web-PaDaWaN: Eine Web-basierte Benutzeroberfläche für ein klinisches Data Warehouse. Dietrich, Georg; Fell, Friedreich; Fette, Georg; Krebs, Jonathan; Ertl, Maximilian; Kaspar, Mathias; Störk, Stefan (2016).
2013
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Implementierung einer HTML5-Applikation mit Offline-Fähigkeit zur Erstellung von Graphen für den Einsatz im CaseTrain-Projekt Krebs, Jonathan (2013).[ BibTeX ]